STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_0055PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; KEGG: mta:Moth_0165 dTDP-4-dehydrorhamnose 3,5-epimerase related. (153 aa)    
Predicted Functional Partners:
Athe_0056
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; polysaccharide biosynthesis protein CapD; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: mth:MTH1789 dTDP-glucose 4,6-dehydratase.
 
 
 0.999
Athe_0060
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
 
 0.999
Athe_0054
PFAM: Nucleotidyl transferase; KEGG: dth:DICTH_0148 glucose-1-phosphate thymidylyltransferase.
 
  
 0.997
Athe_0057
TIGRFAM: methyltransferase FkbM family; PFAM: glycosyl transferase family 2; KEGG: mma:MM_2213 putative glycosyltransferase.
 
  
 0.975
Athe_0159
KEGG: cac:CAC2403 hypothetical protein.
  
  
 0.953
Athe_0062
KEGG: csc:Csac_2566 undecaprenyl-phosphate galactose phosphotransferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
  
 0.919
Athe_0058
PFAM: glycosyl transferase group 1; KEGG: amr:AM1_0384 glycosyl transferase, group 1 family protein.
  
  
 0.911
Athe_0059
PFAM: glycosyl transferase family 2; KEGG: msi:Msm_1329 glycosyl transferase.
 
  
 0.875
Athe_0061
PFAM: glycosyl transferase family 2; KEGG: cbe:Cbei_4758 glycosyl transferase, family 2.
 
  
 0.856
Athe_0233
PFAM: Nucleotidyl transferase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; transferase hexapeptide repeat containing protein; KEGG: csc:Csac_0136 nucleotidyl transferase.
  
  
 0.850
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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