STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_0087KEGG: csc:Csac_2552 extracellular solute-binding protein. (175 aa)    
Predicted Functional Partners:
Athe_0086
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2553 binding-protein-dependent transport systems inner membrane component.
 
   0.889
Athe_0085
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2554 binding-protein-dependent transport systems inner membrane component.
 
    0.774
Athe_0597
PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_0681 ABC-type sugar transport system periplasmic component-like protein.
  
     0.719
Athe_1803
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: csc:Csac_2346 ABC transporter related.
  
 
 0.659
Athe_2032
PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_0358 ABC-type sugar transport system periplasmic component-like protein.
  
     0.594
Athe_2552
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_0299 binding-protein-dependent transport systems inner membrane component.
  
   0.589
Athe_2330
PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_0358 ABC-type sugar transport system periplasmic component-like protein.
  
     0.585
Athe_2378
PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_0358 ABC-type sugar transport system periplasmic component-like protein.
  
     0.585
Athe_0851
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2692 binding-protein-dependent transport systems inner membrane component.
  
   0.567
Athe_0596
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_0680 binding-protein-dependent transport systems inner membrane component.
  
   0.566
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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