STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_0105KEGG: csc:Csac_2506 D-xylose ABC transporter, periplasmic substrate-binding protein; TIGRFAM: D-xylose ABC transporter, periplasmic substrate-binding protein; PFAM: periplasmic binding protein/LacI transcriptional regulator. (351 aa)    
Predicted Functional Partners:
Athe_0107
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: csc:Csac_2504 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
 0.985
xylG
ABC transporter related; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.
 
 0.979
Athe_0101
KEGG: csc:Csac_2510 monosaccharide-transporting ATPase.
 
  
 
0.948
Athe_2265
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: csc:Csac_0241 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
  
 0.790
Athe_2264
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: csc:Csac_0242 periplasmic binding protein/LacI transcriptional regulator.
 
  
 0.770
Athe_2268
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csc:Csac_0238 ABC transporter related.
  
 0.667
rbsA
ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  
 0.666
Athe_0104
KEGG: csc:Csac_2507 hypothetical protein.
 
  
 0.660
Athe_0102
Two component transcriptional regulator, AraC family; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: csc:Csac_2509 response regulator receiver protein.
 
     0.655
Athe_0103
Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; KEGG: csc:Csac_2508 signal transduction histidine kinase, LytS.
 
     0.576
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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