STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylGABC transporter related; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family. (505 aa)    
Predicted Functional Partners:
Athe_0107
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: csc:Csac_2504 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
 0.990
Athe_0105
KEGG: csc:Csac_2506 D-xylose ABC transporter, periplasmic substrate-binding protein; TIGRFAM: D-xylose ABC transporter, periplasmic substrate-binding protein; PFAM: periplasmic binding protein/LacI transcriptional regulator.
 
 0.979
Athe_0101
KEGG: csc:Csac_2510 monosaccharide-transporting ATPase.
 
 0.966
Athe_2265
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: csc:Csac_0241 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
 0.952
Athe_2264
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: csc:Csac_0242 periplasmic binding protein/LacI transcriptional regulator.
 
 0.880
Athe_0104
KEGG: csc:Csac_2507 hypothetical protein.
  
 
 0.722
Athe_1780
PFAM: inner-membrane translocator; KEGG: csc:Csac_2322 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
     0.464
Athe_1779
PFAM: inner-membrane translocator; KEGG: csc:Csac_2321 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
     0.457
Athe_1783
PFAM: basic membrane lipoprotein; KEGG: csc:Csac_2326 basic membrane lipoprotein.
 
     0.427
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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