STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_0113PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csc:Csac_2502 ABC transporter related. (241 aa)    
Predicted Functional Partners:
Athe_0112
KEGG: csc:Csac_2503 ABC-type Na+ efflux pump permease component-like protein.
 
 
 0.998
Athe_1512
PFAM: ABC-2 type transporter; KEGG: csc:Csac_2188 ABC-2 type transporter.
     0.926
Athe_0111
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpf:CPF_1199 ABC transporter, ATP-binding protein.
 
    
0.601
Athe_0114
KEGG: csc:Csac_2501 hypothetical protein.
       0.568
Athe_0826
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csc:Csac_0974 ABC transporter related.
  
     0.541
Athe_0117
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csc:Csac_2498 ABC transporter related.
 
    
0.500
Athe_0115
KEGG: csc:Csac_2500 hypothetical protein.
       0.454
Athe_0109
PFAM: protein of unknown function DUF214; KEGG: cbf:CLI_1307 putative ABC transporter, permease protein.
 
    0.446
Athe_0110
KEGG: cbb:CLD_3345 hypothetical protein.
       0.444
Athe_0118
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: csc:Csac_2497 regulatory protein GntR, HTH.
       0.430
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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