STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_0152PFAM: Acetyl xylan esterase; peptidase S15; KEGG: csc:Csac_2436 acetyl xylan esterase. (321 aa)    
Predicted Functional Partners:
Athe_0607
PFAM: Ig domain protein; KEGG: dth:DICTH_0703 arabinogalactan endo-1,4-beta-galactosidase, putative.
  
   
 0.548
Athe_2335
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: csc:Csac_0598 xylose isomerase domain-containing protein.
 
     0.548
Athe_0184
Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 39; KEGG: csc:Csac_2409 xylan 1,4-beta-xylosidase.
 
   
 0.534
Athe_2029
ABC-type sugar transport system periplasmic component-like protein; KEGG: bcl:ABC0558 sugar ABC transporter substrate-binding protein.
 
     0.526
Athe_0153
KEGG: mxa:MXAN_3266 hypothetical protein.
       0.481
Athe_2724
PFAM: glycoside hydrolase family 10; SMART: glycoside hydrolase family 10; KEGG: csc:Csac_0204 glycoside hydrolase family protein.
 
    0.441
Athe_2082
PFAM: oxidoreductase domain protein; KEGG: tma:TM0426 PHT4-related protein.
  
     0.438
Athe_0151
Phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).
       0.433
Athe_2554
PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_0297 ABC-type sugar transport system periplasmic component-like protein.
 
     0.432
Athe_0849
PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_2694 extracellular solute-binding protein.
 
     0.419
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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