STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_0165PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: csc:Csac_2428 alpha amylase, catalytic region. (557 aa)    
Predicted Functional Partners:
Athe_2579
PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein Ig domain protein region domain protein; SMART: alpha amylase catalytic sub domain; KEGG: csc:Csac_0426 alpha amylase, catalytic region.
 
 
0.935
Athe_0468
PFAM: glycoside hydrolase clan GH-D; KEGG: csc:Csac_1118 glycoside hydrolase, clan GH-D.
 
 
 0.932
Athe_2593
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: csc:Csac_0408 alpha amylase, catalytic region; Belongs to the glycosyl hydrolase 13 family.
  
  
 
0.912
Athe_0228
PFAM: glycoside hydrolase 15-related; KEGG: csc:Csac_0130 glycoside hydrolase 15-related.
    
 0.910
Athe_1104
PFAM: glycoside hydrolase family 4; KEGG: csc:Csac_1562 glycoside hydrolase family protein.
   
 
 0.903
Athe_2243
KEGG: csc:Csac_0715 amino acid transporter-like protein.
   
 0.890
Athe_0167
PFAM: glycosyl transferase family 2; KEGG: csc:Csac_2426 glycosyl transferase family protein.
     
 0.506
Athe_0448
KEGG: csc:Csac_0671 pullulanase, type I; TIGRFAM: pullulanase, type I; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.
  
 0.493
plsY
Protein of unknown function DUF205; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.
       0.489
Athe_2574
PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_0431 extracellular solute-binding protein.
 
  
 0.455
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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