STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_0178KEGG: csc:Csac_2415 hypothetical protein. (733 aa)    
Predicted Functional Partners:
Athe_0177
PFAM: NHL repeat containing protein; KEGG: csc:Csac_2416 hypothetical protein.
 
    0.937
Athe_0179
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2414 binding-protein-dependent transport systems inner membrane component.
     0.910
Athe_0176
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2417 binding-protein-dependent transport systems inner membrane component.
 
     0.886
Athe_0175
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2418 binding-protein-dependent transport systems inner membrane component.
 
     0.875
Athe_0174
PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_2419 extracellular solute-binding protein.
 
     0.871
Athe_0180
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2413 binding-protein-dependent transport systems inner membrane component.
 
     0.861
Athe_0181
PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_2412 extracellular solute-binding protein.
 
     0.845
Athe_0040
PFAM: ABC-2 type transporter; KEGG: csc:Csac_0700 ABC-2 type transporter.
 
 
 0.813
Athe_2347
KEGG: csc:Csac_0145 hypothetical protein.
 
 
 0.813
Athe_2367
KEGG: csc:Csac_0365 hypothetical protein.
  
 
 0.787
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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