STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_0184Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 39; KEGG: csc:Csac_2409 xylan 1,4-beta-xylosidase. (501 aa)    
Predicted Functional Partners:
Athe_0187
PFAM: glycoside hydrolase family 39; KEGG: csc:Csac_2404 glycoside hydrolase family protein.
 
  
 
0.946
Athe_0185
KEGG: csc:Csac_2408 endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; SMART: glycoside hydrolase family 10.
 
  
 0.937
Athe_0183
KEGG: csc:Csac_2410 cellulose 1,4-beta-cellobiosidase; PFAM: glycoside hydrolase family 10; Carbohydrate-binding CenC domain protein; SMART: glycoside hydrolase family 10.
 
   
 0.820
uxaC
PFAM: Glucuronate isomerase; KEGG: csc:Csac_1949 glucuronate isomerase.
     
  0.800
Athe_2028
PFAM: glycoside hydrolase family 4; KEGG: csc:Csac_2748 glycoside hydrolase family protein.
     
  0.800
Athe_2086
Beta-glucuronidase; PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 sugar binding; KEGG: dth:DICTH_1429 beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
     
  0.800
Athe_0182
PFAM: glycoside hydrolase family 43; Carbohydrate binding family 6; Carbohydrate-binding CenC domain protein; SMART: cellulose binding type IV; KEGG: csc:Csac_2411 carbohydrate-binding family 6 protein.
 
   
 0.799
Athe_2724
PFAM: glycoside hydrolase family 10; SMART: glycoside hydrolase family 10; KEGG: csc:Csac_0204 glycoside hydrolase family protein.
  
  
 0.769
Athe_0618
KEGG: csc:Csac_0696 endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; Carbohydrate-binding CenC domain protein; SMART: glycoside hydrolase family 10.
  
  
 0.757
Athe_0854
Alpha-glucuronidase; PFAM: Glycosyl hydrolase 67 middle domain protein; glycosyl hydrolase 67 C-teriminal domain protein; glycoside hydrolase family 67; KEGG: csc:Csac_2689 alpha-glucuronidase; Belongs to the glycosyl hydrolase 67 family.
 
     0.692
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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