STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_0216Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: csc:Csac_0116 phage shock protein A, PspA. (222 aa)    
Predicted Functional Partners:
Athe_0215
KEGG: csc:Csac_0115 hypothetical protein.
       0.653
Athe_0142
PFAM: band 7 protein; KEGG: cpy:Cphy_2023 band 7 protein.
  
  
 0.577
Athe_0214
PFAM: protein of unknown function DUF820; KEGG: csc:Csac_0114 hypothetical protein.
       0.577
Athe_0221
KEGG: csc:Csac_0121 hypothetical protein.
  
  
 0.556
Athe_2626
Putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: csc:Csac_0511 putative signal transduction histidine kinase.
  
  
 0.530
Athe_0212
KEGG: csc:Csac_0112 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK.
       0.526
Athe_0211
KEGG: csc:Csac_0111 hypothetical protein.
       0.511
Athe_0213
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: csc:Csac_0113 short-chain dehydrogenase/reductase SDR.
       0.511
Athe_2740
KEGG: csc:Csac_0020 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; extracellular solute-binding protein family 3; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; extracellular solute-binding protein family 3; PAS domain containing protein.
    
 
 0.508
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
       0.479
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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