STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_0312PFAM: LmbE family protein; KEGG: csc:Csac_0190 LmbE family protein. (487 aa)    
Predicted Functional Partners:
Athe_1710
PFAM: Polynucleotide adenylyltransferase region; KEGG: csc:Csac_2250 tRNA adenylyltransferase.
  
  
 0.751
mgsA
Methylglyoxal synthase; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate.
  
  
 0.718
Athe_1807
PFAM: glycosyl transferase family 2; KEGG: csc:Csac_2350 glycosyl transferase family protein.
   
 0.636
Athe_0084
KEGG: csc:Csac_2555 hypothetical protein.
  
     0.627
Athe_1311
KEGG: csc:Csac_1876 hypothetical protein.
  
     0.546
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
  
    0.543
Athe_0532
KEGG: csc:Csac_0758 hypothetical protein.
  
     0.529
Athe_0104
KEGG: csc:Csac_2507 hypothetical protein.
  
     0.528
Athe_2454
KEGG: csc:Csac_1427 ATPase involved in chromosome partitioning-like protein.
  
     0.525
Athe_1596
KEGG: csc:Csac_0633 ATP-dependent OLD family endonuclease.
  
     0.481
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.