STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_0328Hypothetical protein; KEGG: cbf:CLI_A0023 putative bacteriocin ABC transporter, bacteriocin-binding protein. (466 aa)    
Predicted Functional Partners:
Athe_0327
KEGG: csc:Csac_0158 ABC-type bacteriocin transporter; TIGRFAM: ABC-type bacteriocin transporter; PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase.
 
 
 0.969
Athe_0252
PFAM: secretion protein HlyD family protein; KEGG: cbl:CLK_3683 putative bacteriocin ABC transporter, bacteriocin-binding protein.
  
  
 
0.900
Athe_0251
KEGG: csc:Csac_0158 ABC-type bacteriocin transporter; TIGRFAM: ABC-type bacteriocin transporter; PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase.
 
 
 0.872
Athe_1399
PFAM: ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; KEGG: csc:Csac_0158 ABC-type bacteriocin transporter.
 
 
 0.798
Athe_1112
PFAM: ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; KEGG: bha:BH0451 lantibiotic mersacidin transporter system.
 
 
 0.677
Athe_1962
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: cth:Cthe_1685 ABC transporter related protein.
 
 
 0.591
Athe_0329
KEGG: csc:Csac_0165 hypothetical protein.
       0.532
Athe_0895
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csc:Csac_1489 ABC transporter related.
  
 
 0.528
Athe_2740
KEGG: csc:Csac_0020 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; extracellular solute-binding protein family 3; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; extracellular solute-binding protein family 3; PAS domain containing protein.
 
  
 0.486
hisI
TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: csc:Csac_2019 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; In the N-terminal section; belongs to the PRA-CH family.
  
    0.472
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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