STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_0340UvrD/REP helicase; ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily. (951 aa)    
Predicted Functional Partners:
Athe_0339
KEGG: csc:Csac_1167 hypothetical protein.
 
 
 0.998
recD2
Helicase, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
  
 
 0.843
Athe_2572
KEGG: csc:Csac_0278 hypothetical protein.
  
     0.750
Athe_2570
PFAM: MORN variant repeat protein; KEGG: csc:Csac_0283 hypothetical protein.
  
     0.745
Athe_2342
PFAM: S-layer domain protein; KEGG: csc:Csac_0590 hypothetical protein.
  
     0.744
Athe_2566
PFAM: MORN variant repeat protein; KEGG: csc:Csac_0283 hypothetical protein.
  
     0.743
Athe_1573
KEGG: csc:Csac_0661 hypothetical protein.
  
     0.742
Athe_0663
KEGG: csc:Csac_0834 peptidase M42 family protein.
  
     0.739
Athe_1944
PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: csc:Csac_1008 fibronectin, type III domain-containing protein.
  
     0.734
Athe_2295
PFAM: S-layer domain protein; KEGG: csc:Csac_2445 S-layer domain-containing protein.
  
     0.727
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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