STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_0342PFAM: major facilitator superfamily MFS_1; KEGG: csc:Csac_1170 major facilitator transporter. (421 aa)    
Predicted Functional Partners:
Athe_0339
KEGG: csc:Csac_1167 hypothetical protein.
 
     0.769
Athe_2369
KEGG: csc:Csac_0363 hypothetical protein.
  
     0.720
Athe_2682
KEGG: csc:Csac_0044 hypothetical protein.
  
     0.690
Athe_1246
KEGG: csc:Csac_1811 hypothetical protein.
  
     0.682
Athe_2581
KEGG: csc:Csac_0424 hypothetical protein.
  
     0.668
Athe_0340
UvrD/REP helicase; ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily.
 
    0.655
Athe_0663
KEGG: csc:Csac_0834 peptidase M42 family protein.
  
     0.645
Athe_0341
KEGG: csc:Csac_1169 anaerobic ribonucleoside-triphosphate reductase activating protein; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
       0.631
Athe_2570
PFAM: MORN variant repeat protein; KEGG: csc:Csac_0283 hypothetical protein.
  
     0.613
Athe_2566
PFAM: MORN variant repeat protein; KEGG: csc:Csac_0283 hypothetical protein.
  
     0.611
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.