STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_0417PFAM: Linocin_M18 bacteriocin protein; KEGG: cth:Cthe_1504 Linocin_M18 bacteriocin protein. (264 aa)    
Predicted Functional Partners:
Athe_0416
KEGG: cth:Cthe_1503 hypothetical protein.
 
     0.949
Athe_0418
PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: csc:Csac_0445 rubrerythrin.
       0.682
Athe_0454
KEGG: csc:Csac_0462 hypothetical protein.
 
     0.495
Athe_0415
PFAM: glycoside hydrolase family 65 domain protein; KEGG: csc:Csac_0444 kojibiose phosphorylase.
       0.492
Athe_0419
KEGG: afl:Aflv_1253 hypothetical protein.
       0.434
Athe_1105
PFAM: GCN5-related N-acetyltransferase; KEGG: csc:Csac_1563 GCN5-related N-acetyltransferase.
  
     0.424
Athe_1113
PFAM: GCN5-related N-acetyltransferase; KEGG: csc:Csac_1563 GCN5-related N-acetyltransferase.
  
     0.422
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.