STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_0428PFAM: ferredoxin; KEGG: csc:Csac_0451 ferredoxin. (605 aa)    
Predicted Functional Partners:
Athe_2582
Methionine synthase; PFAM: cobalamin B12-binding domain protein; Methionine synthase B12-binding module cap domain protein; KEGG: csc:Csac_0423 cobalamin B12-binding domain-containing protein.
 
    0.835
Athe_0429
PFAM: SNARE associated Golgi protein; KEGG: csc:Csac_0452 hypothetical protein.
       0.781
Athe_0426
PFAM: peptidase U32; KEGG: csc:Csac_0449 peptidase U32.
       0.761
Athe_0427
TIGRFAM: sporulation integral membrane protein YtvI; PFAM: protein of unknown function UPF0118; KEGG: csc:Csac_0450 beta tubulin, autoregulation binding site.
       0.761
Athe_0749
PFAM: dihydropteroate synthase DHPS; KEGG: csc:Csac_0898 dihydropteroate synthase, DhpS.
 
 
 
 0.741
Athe_0430
PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; KEGG: csc:Csac_0453 cell wall hydrolase/autolysin.
       0.737
Athe_0431
TIGRFAM: dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: csc:Csac_0454 dipeptidase, putative.
       0.737
Athe_0424
Protein of unknown function DUF710; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.
       0.689
Athe_0425
PFAM: metalloenzyme domain protein; KEGG: csc:Csac_0448 metalloenzyme domain-containing protein.
       0.689
Athe_0848
KEGG: csc:Csac_2695 uroporphyrinogen-III decarboxylase-like protein; Belongs to the uroporphyrinogen decarboxylase family.
 
    0.607
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.