STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_0432Protein of unknown function DUF204; Probably functions as a manganese efflux pump. (208 aa)    
Predicted Functional Partners:
Athe_2766
TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: csc:Csac_2778 spore germination protein.
  
     0.721
Athe_2767
TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein; KEGG: csc:Csac_2779 spore germination B3 GerAC family protein.
  
    0.699
Athe_2765
PFAM: GerA spore germination protein; KEGG: csc:Csac_2777 GerA spore germination protein.
  
     0.679
Athe_1229
PFAM: nucleoside recognition domain protein; KEGG: csc:Csac_1794 hypothetical protein.
  
     0.617
Athe_0979
TIGRFAM: dipicolinic acid synthetase, B subunit; PFAM: flavoprotein; KEGG: csc:Csac_2145 dipicolinate synthase subunit B.
  
     0.613
Athe_1336
TIGRFAM: stage IV sporulation protein B; PFAM: peptidase S55 SpoIVB; KEGG: csc:Csac_1899 peptidase S55, SpoIVB.
  
     0.613
Athe_0994
KEGG: csc:Csac_2130 hypothetical protein.
  
     0.610
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
  
    0.610
Athe_0978
KEGG: csc:Csac_2146 dipicolinate synthase subunit A.
  
     0.597
Athe_1956
PFAM: GerA spore germination protein; KEGG: csc:Csac_0996 GerA spore germination protein.
  
     0.576
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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