STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_0477PFAM: Rubrerythrin; KEGG: csc:Csac_1137 rubrerythrin. (164 aa)    
Predicted Functional Partners:
Athe_0587
KEGG: csc:Csac_0824 hypothetical protein.
   
 
 0.732
Athe_2369
KEGG: csc:Csac_0363 hypothetical protein.
  
     0.643
Athe_1246
KEGG: csc:Csac_1811 hypothetical protein.
  
     0.620
Athe_1391
PFAM: Peptidoglycan-binding LysM; KEGG: csc:Csac_1946 peptidoglycan-binding LysM.
  
     0.592
Athe_2571
PFAM: transglutaminase domain protein; SMART: Hedgehog/intein hint domain protein; KEGG: csc:Csac_0279 hypothetical protein.
  
     0.550
Athe_1113
PFAM: GCN5-related N-acetyltransferase; KEGG: csc:Csac_1563 GCN5-related N-acetyltransferase.
  
     0.526
Athe_1105
PFAM: GCN5-related N-acetyltransferase; KEGG: csc:Csac_1563 GCN5-related N-acetyltransferase.
  
     0.524
Athe_1944
PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: csc:Csac_1008 fibronectin, type III domain-containing protein.
  
     0.512
Athe_2572
KEGG: csc:Csac_0278 hypothetical protein.
  
     0.505
Athe_0342
PFAM: major facilitator superfamily MFS_1; KEGG: csc:Csac_1170 major facilitator transporter.
  
     0.496
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.