STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_0604KEGG: csc:Csac_0687 hypothetical protein. (235 aa)    
Predicted Functional Partners:
Athe_0605
KEGG: csc:Csac_0688 hypothetical protein.
       0.522
Athe_1069
PFAM: protein of unknown function DUF1385; KEGG: csc:Csac_1521 hypothetical protein.
   
    0.502
leuS
TIGRFAM: leucyl-tRNA synthetase; KEGG: csc:Csac_1819 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
    
   0.499
Athe_2197
PFAM: tRNA pseudouridine synthase D TruD; KEGG: csc:Csac_1232 tRNA pseudouridine synthase D, TruD.
  
     0.474
Athe_2594
KEGG: csc:Csac_0383 hypothetical protein.
  
     0.464
Athe_0325
PFAM: homocysteine S-methyltransferase; methylenetetrahydrofolate reductase; KEGG: csc:Csac_1165 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein.
  
  
 0.455
argD
TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: csc:Csac_2379 acetylornithine and succinylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
 
 0.436
Athe_1389
PFAM: Protein of unknown function DUF1867; KEGG: csc:Csac_1944 hypothetical protein.
  
     0.412
Athe_0122
TIGRFAM: CRISPR-associated CXXC_CXXC protein Cst1; KEGG: csc:Csac_2400 CRISPR-associated Cst1 family protein.
  
     0.403
Athe_2729
KEGG: csc:Csac_0094 hypothetical protein.
  
     0.403
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.