STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_0650PFAM: YabP family protein; KEGG: csc:Csac_1216 YabP family protein. (91 aa)    
Predicted Functional Partners:
Athe_1336
TIGRFAM: stage IV sporulation protein B; PFAM: peptidase S55 SpoIVB; KEGG: csc:Csac_1899 peptidase S55, SpoIVB.
  
   
 0.779
Athe_1956
PFAM: GerA spore germination protein; KEGG: csc:Csac_0996 GerA spore germination protein.
  
     0.754
Athe_0651
KEGG: csc:Csac_1217 hypothetical protein.
       0.750
Athe_1271
KEGG: csc:Csac_1836 hypothetical protein.
 
   
 0.750
Athe_1006
TIGRFAM: stage V sporulation protein T; transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: csc:Csac_2118 AbrB family transcriptional regulator.
 
     0.749
Athe_2765
PFAM: GerA spore germination protein; KEGG: csc:Csac_2777 GerA spore germination protein.
  
     0.739
Athe_0649
PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: csc:Csac_1215 RNA-binding S4 domain-containing protein.
  
    0.738
Athe_0652
PFAM: Septum formation initiator; KEGG: csc:Csac_1218 septum formation initiator.
  
  
 0.735
Athe_2732
TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein; KEGG: csc:Csac_0091 stage V sporulation protein AD.
  
     0.722
Athe_0628
TIGRFAM: sporulation protein, YlmC/YmxH family; PFAM: PRC-barrel domain protein; KEGG: csc:Csac_1196 PRC-barrel domain-containing protein.
  
     0.721
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.