STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaAKEGG: csc:Csac_0876 L-rhamnose isomerase; TIGRFAM: L-rhamnose isomerase; PFAM: L-rhamnose isomerase; Belongs to the rhamnose isomerase family. (426 aa)    
Predicted Functional Partners:
Athe_0841
PFAM: carbohydrate kinase FGGY; KEGG: csc:Csac_0989 carbohydrate kinase, FGGY.
 
 
 0.993
Athe_0705
Transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; KEGG: csc:Csac_0875 DeoR family transcriptional regulator.
  
  
 0.719
Athe_0702
PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: csc:Csac_0872 dehydrogenase catalytic domain-containing protein.
     
 0.690
Athe_0704
PFAM: Transketolase central region; dehydrogenase E1 component; Transketolase domain protein; KEGG: csc:Csac_0874 transketolase, central region.
 
     0.690
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: csc:Csac_0798 xylulokinase.
  
  
 0.660
xylB-2
PFAM: carbohydrate kinase FGGY; KEGG: csc:Csac_0348 carbohydrate kinase, FGGY.
  
  
 0.660
uxaC
PFAM: Glucuronate isomerase; KEGG: csc:Csac_1949 glucuronate isomerase.
      
 0.604
Athe_1997
PFAM: carbohydrate kinase FGGY; KEGG: afu:AF1752 carbohydrate kinase.
  
  
 0.559
Athe_0703
TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; HI0933 family protein; KEGG: csc:Csac_0873 dihydrolipoamide dehydrogenase.
       0.520
pgk
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
   
  
 0.483
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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