STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_0716KEGG: csc:Csac_0886 hypothetical protein. (376 aa)    
Predicted Functional Partners:
Athe_0715
KEGG: csc:Csac_0885 hypothetical protein.
  
  
 0.810
Athe_0717
KEGG: csc:Csac_0887 hypothetical protein.
       0.636
Athe_2147
PFAM: CheC domain protein; KEGG: csc:Csac_1283 CheC, inhibitor of MCP methylation.
    
   0.545
Athe_2160
CheC, inhibitor of MCP methylation / FliN fusion protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: csc:Csac_1270 flagellar motor switch protein.
    
   0.545
Athe_1898
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Thioredoxin domain; Redoxin domain protein; KEGG: csc:Csac_1046 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
  
 
 0.541
Athe_0714
KEGG: csc:Csac_0884 hypothetical protein.
       0.481
Athe_0718
PFAM: KWG Leptospira repeat protein; KEGG: cno:NT01CX_1069 hypothetical protein.
     
 0.475
Athe_2280
TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: csc:Csac_0225 heavy metal translocating P-type ATPase.
   
 
 0.462
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 3'-5' and 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.448
Athe_0533
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: csc:Csac_0759 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
  
 0.407
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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