STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_0723PFAM: KWG Leptospira repeat protein; KEGG: cbh:CLC_1691 hypothetical protein. (89 aa)    
Predicted Functional Partners:
Athe_0722
PFAM: KWG Leptospira repeat protein; KEGG: ter:Tery_2057 hypothetical protein.
 
     0.939
Athe_0721
PFAM: KWG Leptospira repeat protein; KEGG: csc:Csac_0643 hypothetical protein.
 
    
0.799
Athe_0720
PFAM: KWG Leptospira repeat protein; KEGG: cbl:CLK_1129 hypothetical protein.
 
    
0.718
Athe_2693
FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: nis:NIS_0193 hypothetical protein.
   
 
 0.702
Athe_2223
PFAM: KWG Leptospira repeat protein; KEGG: ctc:CTC01367 hypothetical protein.
  
     0.671
Athe_0719
Hypothetical protein.
       0.651
Athe_0718
PFAM: KWG Leptospira repeat protein; KEGG: cno:NT01CX_1069 hypothetical protein.
 
    
0.485
Athe_0724
PKD domain containing protein; KEGG: mhu:Mhun_0418 PKD.
  
    0.484
Athe_2740
KEGG: csc:Csac_0020 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; extracellular solute-binding protein family 3; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; extracellular solute-binding protein family 3; PAS domain containing protein.
  
  
 0.420
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.