STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_0799Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: csc:Csac_0945 putative transcriptional regulator. (374 aa)    
Predicted Functional Partners:
Athe_0864
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: pmo:Pmob_1244 putative transcriptional regulator.
 
  
 
0.933
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
     
  0.900
Athe_0798
KEGG: csc:Csac_0944 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region.
       0.782
Athe_0800
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: csc:Csac_0946 TPR repeat-containing protein.
  
    0.724
thrS
threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).
       0.591
Athe_1596
KEGG: csc:Csac_0633 ATP-dependent OLD family endonuclease.
 
    0.587
Athe_0541
TIGRFAM: spore coat protein, CotS family; PFAM: aminoglycoside phosphotransferase; KEGG: csc:Csac_0767 hypothetical protein.
  
     0.565
Athe_0543
TIGRFAM: spore coat protein, CotS family; KEGG: csc:Csac_0769 hypothetical protein.
  
     0.545
Athe_0797
KEGG: csc:Csac_0942 hypothetical protein.
       0.491
Athe_1604
KEGG: bcl:ABC1399 hypothetical protein.
  
    0.488
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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