STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_0863TIGRFAM: transposase; transposase, IS605 OrfB family; KEGG: csc:Csac_0831 transposase, putative. (512 aa)    
Predicted Functional Partners:
Athe_0785
PFAM: Resolvase domain; regulatory protein MerR; KEGG: csc:Csac_1318 resolvase domain-containing protein.
 
    0.755
bpsA
Protein of unknown function DUF43; Involved in the biosynthesis of branched-chain polyamines, which support the growth of thermophiles under high-temperature conditions. Catalyzes the sequential condensation of spermidine with the aminopropyl groups of decarboxylated S-adenosylmethionines to produce N(4)-bis(aminopropyl)spermidine via N(4)-aminopropylspermidine.
  
     0.684
Athe_0025
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
     0.653
Athe_2703
TIGRFAM: CRISPR-associated protein, Csm2 family; PFAM: protein of unknown function DUF310; KEGG: csc:Csac_0076 CRISPR-associated Csm2 family protein.
  
     0.614
Athe_2288
tRNA methyltransferase complex GCD14 subunit; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.
  
     0.539
Athe_0963
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csc:Csac_2162 ABC transporter related.
  
     0.498
Athe_1673
KEGG: csc:Csac_1666 hypothetical protein.
  
     0.495
Athe_2700
TIGRFAM: CRISPR-associated RAMP protein, Csm5 family; PFAM: protein of unknown function DUF324; KEGG: csc:Csac_0079 CRISPR-associated RAMP Csm5 family protein.
  
     0.492
Athe_2701
TIGRFAM: CRISPR-associated RAMP protein, Csm4 family; PFAM: protein of unknown function DUF324; KEGG: csc:Csac_0078 CRISPR-associated RAMP Csm4 family protein.
  
     0.454
Athe_0864
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: pmo:Pmob_1244 putative transcriptional regulator.
      
 0.440
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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