STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_0963PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csc:Csac_2162 ABC transporter related. (284 aa)    
Predicted Functional Partners:
Athe_0960
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: csc:Csac_2165 regulatory protein GntR, HTH.
 
    0.904
Athe_1707
KEGG: csc:Csac_2247 hypothetical protein.
 
   0.707
Athe_0961
KEGG: csc:Csac_2164 hypothetical protein.
       0.680
Athe_0959
KEGG: csc:Csac_2166 hypothetical protein.
       0.676
Athe_0962
KEGG: csc:Csac_2163 dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein.
       0.652
Athe_2367
KEGG: csc:Csac_0365 hypothetical protein.
 
 
 0.615
Athe_0025
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
     0.586
Athe_0040
PFAM: ABC-2 type transporter; KEGG: csc:Csac_0700 ABC-2 type transporter.
  
 
 0.561
Athe_2347
KEGG: csc:Csac_0145 hypothetical protein.
   
 
 0.544
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
 
 0.506
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.