STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_1100KEGG: csc:Csac_1553 hypothetical protein. (221 aa)    
Predicted Functional Partners:
Athe_1099
PFAM: VanW family protein; G5 domain protein; KEGG: csc:Csac_1552 VanW family protein.
 
     0.821
Athe_2134
PFAM: CheC domain protein; KEGG: csc:Csac_1295 CheC domain-containing protein.
 
     0.728
Athe_1097
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: csc:Csac_1550 thiamine pyrophosphate binding domain-containing protein.
       0.723
Athe_1098
PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: csc:Csac_1551 pyruvate ferredoxin/flavodoxin oxidoreductase.
       0.723
Athe_2150
PFAM: type IV pilus assembly PilZ; KEGG: csc:Csac_1280 type IV pilus assembly PilZ.
  
     0.719
Athe_2143
PFAM: protein of unknown function DUF342; KEGG: csc:Csac_1286 hypothetical protein.
 
     0.687
Athe_2232
PFAM: CheC domain protein; KEGG: swo:Swol_1446 CheX protein (uncharacterized ORF in chemotaxis operon).
 
     0.684
Athe_1101
KEGG: csc:Csac_1554 hypothetical protein.
 
     0.664
Athe_0514
PFAM: protein of unknown function DUF327; KEGG: csc:Csac_0742 hypothetical protein.
 
     0.646
Athe_1096
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: csc:Csac_1549 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
       0.602
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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