STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_1263PFAM: tryptophan RNA-binding attenuator protein; KEGG: csc:Csac_1828 transcription attenuation protein MtrB. (82 aa)    
Predicted Functional Partners:
Athe_1264
KEGG: csc:Csac_1829 hypothetical protein.
       0.800
pfkA
6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.
       0.733
Athe_1262
DNA polymerase III, alpha subunit; KEGG: csc:Csac_1827 DNA polymerase III DnaE; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein.
       0.723
Athe_1266
TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; PEP-utilising protein mobile region; Pyruvate kinase alpha/beta; KEGG: csc:Csac_1831 pyruvate kinase; Belongs to the pyruvate kinase family.
       0.721
Athe_1267
PFAM: thioesterase superfamily protein; KEGG: csc:Csac_1832 thioesterase superfamily protein.
       0.564
Athe_1260
TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: csc:Csac_1825 5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
       0.540
Athe_1261
KEGG: csc:Csac_1826 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region.
       0.540
Athe_0979
TIGRFAM: dipicolinic acid synthetase, B subunit; PFAM: flavoprotein; KEGG: csc:Csac_2145 dipicolinate synthase subunit B.
  
     0.534
Athe_0232
PFAM: glycosyl transferase group 1; KEGG: csc:Csac_0134 glycosyl transferase, group 1.
  
     0.448
Athe_0978
KEGG: csc:Csac_2146 dipicolinate synthase subunit A.
  
     0.435
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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