STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_1272PFAM: PhoH family protein; KEGG: csc:Csac_1837 PhoH family protein. (325 aa)    
Predicted Functional Partners:
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.980
Athe_1275
PFAM: diacylglycerol kinase; phosphoesterase PA-phosphatase related; KEGG: csc:Csac_1840 diacylglycerol kinase.
  
  
 0.873
Athe_1273
KEGG: csc:Csac_1838 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; metal-dependent phosphohydrolase 7TM intracellular region; SMART: metal-dependent phosphohydrolase HD region.
     
 0.853
Athe_1276
KEGG: csc:Csac_1841 hypothetical protein.
  
    0.812
Athe_1270
TIGRFAM: sporulation protein YqfC; PFAM: protein of unknown function DUF1429; KEGG: csc:Csac_1835 hypothetical protein.
       0.801
Athe_1271
KEGG: csc:Csac_1836 hypothetical protein.
       0.801
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
    0.801
Athe_1277
PFAM: RNA-metabolising metallo-beta-lactamase; beta-lactamase domain protein; KEGG: csc:Csac_1842 RNA-metabolising metallo-beta-lactamase.
       0.711
Athe_1777
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
  
    0.608
Athe_1269
KEGG: csc:Csac_1834 GatB/YqeY domain-containing protein.
       0.593
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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