STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_1276KEGG: csc:Csac_1841 hypothetical protein. (356 aa)    
Predicted Functional Partners:
Athe_1272
PFAM: PhoH family protein; KEGG: csc:Csac_1837 PhoH family protein.
  
    0.812
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
    0.812
Athe_1273
KEGG: csc:Csac_1838 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; metal-dependent phosphohydrolase 7TM intracellular region; SMART: metal-dependent phosphohydrolase HD region.
       0.811
Athe_1275
PFAM: diacylglycerol kinase; phosphoesterase PA-phosphatase related; KEGG: csc:Csac_1840 diacylglycerol kinase.
       0.811
Athe_1270
TIGRFAM: sporulation protein YqfC; PFAM: protein of unknown function DUF1429; KEGG: csc:Csac_1835 hypothetical protein.
 
     0.805
Athe_1271
KEGG: csc:Csac_1836 hypothetical protein.
       0.761
Athe_1277
PFAM: RNA-metabolising metallo-beta-lactamase; beta-lactamase domain protein; KEGG: csc:Csac_1842 RNA-metabolising metallo-beta-lactamase.
       0.741
Athe_0980
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: csc:Csac_2144 cell divisionFtsK/SpoIIIE.
   
 
 0.704
Athe_1622
KEGG: csc:Csac_1730 hypothetical protein.
    
   0.671
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.602
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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