STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_1817Hypothetical protein. (73 aa)    
Predicted Functional Partners:
rpsB
TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: csc:Csac_2359 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
       0.746
Athe_1818
Nucleotide sugar dehydrogenase; KEGG: csc:Csac_2360 GDP-mannose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
       0.714
Athe_1819
KEGG: csc:Csac_2361 hypothetical protein.
       0.714
tsf
Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
       0.633
Athe_1820
KEGG: csc:Csac_2362 hypothetical protein.
       0.479
Athe_1821
KEGG: csc:Csac_2363 hypothetical protein.
       0.462
frr
Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.
       0.414
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
       0.414
Athe_1822
PFAM: O-antigen polymerase; KEGG: csc:Csac_2364 O-antigen polymerase.
       0.413
Athe_1823
PFAM: Fibronectin-binding A domain protein; protein of unknown function DUF814; KEGG: csc:Csac_2365 fibronectin-binding A domain-containing protein.
       0.413
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.