STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_1859PFAM: glycoside hydrolase family 5; type 3a cellulose-binding domain protein; KEGG: csc:Csac_1077 glycoside hydrolase family protein. (1294 aa)    
Predicted Functional Partners:
Athe_1865
PFAM: glycoside hydrolase family 9; glycoside hydrolase family 5; type 3a cellulose-binding domain protein; KEGG: csc:Csac_1079 cellulose 1,4-beta-cellobiosidase; Belongs to the glycosyl hydrolase 9 (cellulase E) family.
  
  
0.917
Athe_2118
PFAM: PfkB domain protein; KEGG: csc:Csac_1312 ribokinase-like domain-containing protein.
   
 
  0.801
Athe_2567
SMART: Hedgehog/intein hint domain protein; KEGG: csc:Csac_0286 hypothetical protein.
  
     0.733
Athe_2571
PFAM: transglutaminase domain protein; SMART: Hedgehog/intein hint domain protein; KEGG: csc:Csac_0279 hypothetical protein.
  
     0.716
Athe_0183
KEGG: csc:Csac_2410 cellulose 1,4-beta-cellobiosidase; PFAM: glycoside hydrolase family 10; Carbohydrate-binding CenC domain protein; SMART: glycoside hydrolase family 10.
  
     0.708
Athe_0089
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 11; Carbohydrate binding family 6; KEGG: dth:DICTH_1968 endo-1,4-beta-xylanase A; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
     0.705
Athe_0618
KEGG: csc:Csac_0696 endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; Carbohydrate-binding CenC domain protein; SMART: glycoside hydrolase family 10.
  
     0.675
Athe_2120
PFAM: Ig domain protein group 2 domain protein; Thrombospondin type 3 repeat; von Willebrand factor type A; SMART: von Willebrand factor type A; Parallel beta-helix repeat; Ig domain protein group 2 domain protein; KEGG: csc:Csac_1310 Ig domain-containing protein.
 
  
 0.670
Athe_1944
PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: csc:Csac_1008 fibronectin, type III domain-containing protein.
  
     0.669
Athe_1860
PFAM: glycoside hydrolase family 48; type 3a cellulose-binding domain protein; Kelch repeat-containing protein; glycosyl hydrolase BNR repeat-containing protein; KEGG: csc:Csac_1076 glycoside hydrolase family protein.
 
 
0.647
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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