STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_1895PFAM: transport system permease protein; ABC-3 protein; KEGG: csc:Csac_1049 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (336 aa)    
Predicted Functional Partners:
Athe_1894
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csc:Csac_1050 ABC transporter related.
 
 
 0.993
Athe_1896
PFAM: periplasmic binding protein; KEGG: csc:Csac_1048 periplasmic binding protein.
 
 
 0.993
Athe_0275
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csc:Csac_0175 ABC transporter related.
 
 
 0.974
Athe_0273
PFAM: periplasmic binding protein; KEGG: mta:Moth_1466 periplasmic binding protein.
 
 
 0.967
Athe_0168
KEGG: csc:Csac_2425 CopG family transcriptional regulator.
  
 
 0.874
Athe_1893
PFAM: protein of unknown function DUF1121; KEGG: csc:Csac_1051 hypothetical protein.
       0.782
Athe_1897
PFAM: glycine cleavage H-protein; KEGG: csc:Csac_1047 glycine cleavage H-protein.
       0.586
Athe_1199
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: csc:Csac_1652 uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
  
  
 0.543
Athe_1898
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Thioredoxin domain; Redoxin domain protein; KEGG: csc:Csac_1046 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
     
 0.536
Athe_1899
PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: csc:Csac_1045 cytochrome c biogenesis protein, transmembrane region.
  
    0.463
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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