STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_1968PFAM: Radical SAM domain protein; KEGG: cbe:Cbei_2008 radical SAM domain protein. (458 aa)    
Predicted Functional Partners:
Athe_1970
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cth:Cthe_1690 radical SAM family protein.
 
    
0.780
Athe_1967
KEGG: cth:Cthe_1689 hypothetical protein.
       0.773
Athe_1969
Hypothetical protein.
       0.762
Athe_1580
PFAM: Radical SAM domain protein; KEGG: csc:Csac_0653 arylsulfatase regulator (Fe-S oxidoreductase)-like protein.
  
     0.759
Athe_1966
Hypothetical protein.
       0.727
Athe_1199
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: csc:Csac_1652 uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
 
  
 0.468
Athe_1965
KEGG: nth:Nther_0486 hypothetical protein.
       0.447
Athe_1962
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: cth:Cthe_1685 ABC transporter related protein.
       0.440
Athe_1963
Hypothetical protein.
       0.439
Athe_1964
KEGG: bcz:BCZK2723 hypothetical protein.
       0.439
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.