STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_1971PFAM: Xylose isomerase domain protein TIM barrel; KEGG: csc:Csac_2701 xylose isomerase domain-containing protein. (265 aa)    
Predicted Functional Partners:
Athe_0789
PFAM: AMP-dependent synthetase and ligase; KEGG: csc:Csac_0934 AMP-dependent synthetase and ligase.
  
 0.925
Athe_2335
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: csc:Csac_0598 xylose isomerase domain-containing protein.
  
     0.642
Athe_2082
PFAM: oxidoreductase domain protein; KEGG: tma:TM0426 PHT4-related protein.
 
  
 0.613
Athe_2334
PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; Oxidoreductase domain; KEGG: csc:Csac_0599 oxidoreductase domain-containing protein.
 
  
 0.580
Athe_2585
PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; KEGG: csc:Csac_0420 oxidoreductase domain-containing protein.
 
  
 0.576
Athe_0344
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: csc:Csac_1172 oxidoreductase domain-containing protein.
 
  
 0.561
Athe_2078
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: tma:TM0425 oxidoreductase, putative.
 
  
 0.554
Athe_1239
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: csc:Csac_1804 oxidoreductase domain-containing protein.
 
  
 0.535
Athe_1972
KEGG: csc:Csac_2702 hypothetical protein.
       0.524
Athe_0499
PFAM: amidohydrolase 2; TatD-related deoxyribonuclease; KEGG: csc:Csac_1139 amidohydrolase 2.
 
     0.517
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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