STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_1972KEGG: csc:Csac_2702 hypothetical protein. (132 aa)    
Predicted Functional Partners:
Athe_1765
PFAM: Sporulation protein YtxC; KEGG: csc:Csac_2312 hypothetical protein.
  
     0.660
Athe_1973
KEGG: csc:Csac_2703 hypothetical protein.
  
    0.544
Athe_1971
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: csc:Csac_2701 xylose isomerase domain-containing protein.
       0.524
Athe_1264
KEGG: csc:Csac_1829 hypothetical protein.
  
     0.505
Athe_1100
KEGG: csc:Csac_1553 hypothetical protein.
  
    0.482
Athe_1013
KEGG: csc:Csac_2111 hypothetical protein.
  
     0.467
Athe_1000
KEGG: csc:Csac_2124 hypothetical protein.
  
     0.443
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.429
Athe_0586
KEGG: csc:Csac_0823 hypothetical protein.
  
     0.405
Athe_1466
KEGG: csc:Csac_2013 hypothetical protein.
  
     0.405
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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