STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_2001TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; KEGG: csc:Csac_1412 hypothetical protein. (419 aa)    
Predicted Functional Partners:
Athe_2002
KEGG: csc:Csac_1412 hypothetical protein.
       0.714
Athe_0980
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: csc:Csac_2144 cell divisionFtsK/SpoIIIE.
   
 
 0.704
Athe_1622
KEGG: csc:Csac_1730 hypothetical protein.
    
   0.671
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.602
Athe_0234
PFAM: glycoside hydrolase family 5; KEGG: csc:Csac_0137 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
   0.456
Athe_0594
Cellulase; PFAM: Carbohydrate binding family 17/28; glycoside hydrolase family 5; S-layer domain protein; KEGG: csc:Csac_0678 cellulase.
    
   0.456
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.