STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_2019PFAM: protein of unknown function DUF87; KEGG: csc:Csac_2593 hypothetical protein. (700 aa)    
Predicted Functional Partners:
Athe_2018
KEGG: csc:Csac_2594 hypothetical protein.
 
     0.928
Athe_1138
KEGG: csc:Csac_1588 hypothetical protein.
 
 
 
 0.880
Athe_0140
PFAM: protein of unknown function DUF324; KEGG: csc:Csac_0489 hypothetical protein.
  
    0.731
Athe_0136
KEGG: tex:Teth514_1836 hypothetical protein.
  
     0.707
Athe_0137
PFAM: protein of unknown function DUF324; KEGG: csc:Csac_0486 hypothetical protein.
  
     0.702
Athe_0138
PFAM: protein of unknown function DUF324; KEGG: tpd:Teth39_0921 hypothetical protein.
  
     0.667
Athe_1139
KEGG: csc:Csac_1589 hypothetical protein.
 
     0.515
Athe_2017
PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: csc:Csac_1403 D12 class N6 adenine-specific DNA methyltransferase.
 
     0.509
Athe_2558
KEGG: csc:Csac_0293 hypothetical protein.
  
     0.480
Athe_2021
KEGG: csc:Csac_1444 radical SAM domain-containing protein.
  
     0.446
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.