STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bpsAProtein of unknown function DUF43; Involved in the biosynthesis of branched-chain polyamines, which support the growth of thermophiles under high-temperature conditions. Catalyzes the sequential condensation of spermidine with the aminopropyl groups of decarboxylated S-adenosylmethionines to produce N(4)-bis(aminopropyl)spermidine via N(4)-aminopropylspermidine. (355 aa)    
Predicted Functional Partners:
Athe_2197
PFAM: tRNA pseudouridine synthase D TruD; KEGG: csc:Csac_1232 tRNA pseudouridine synthase D, TruD.
 
     0.841
Athe_0076
TIGRFAM: transposase; transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; KEGG: csc:Csac_0831 transposase, putative.
  
     0.685
Athe_0786
TIGRFAM: transposase; transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; KEGG: csc:Csac_0831 transposase, putative.
  
     0.685
Athe_2110
TIGRFAM: transposase; transposase, IS605 OrfB family; KEGG: csc:Csac_0831 transposase, putative.
  
     0.685
Athe_0863
TIGRFAM: transposase; transposase, IS605 OrfB family; KEGG: csc:Csac_0831 transposase, putative.
  
     0.684
Athe_1928
TIGRFAM: transposase; transposase, IS605 OrfB family; KEGG: csc:Csac_0831 transposase, putative.
  
     0.684
Athe_2288
tRNA methyltransferase complex GCD14 subunit; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.
  
     0.659
Athe_1613
PFAM: Circadian clock protein KaiC central region; KEGG: csc:Csac_1738 putative circadian clock protein, KaiC.
  
     0.656
rpmB
TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: csc:Csac_1230 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
       0.551
Athe_0195
PFAM: PP-loop domain protein; KEGG: csc:Csac_0104 PP-loop domain-containing protein; Belongs to the TtcA family.
  
     0.490
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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