STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_2221PFAM: transposase IS4 family protein; KEGG: csc:Csac_2323 transposase, IS4 family protein. (316 aa)    
Predicted Functional Partners:
Athe_1573
KEGG: csc:Csac_0661 hypothetical protein.
  
     0.753
Athe_2295
PFAM: S-layer domain protein; KEGG: csc:Csac_2445 S-layer domain-containing protein.
  
     0.744
Athe_0663
KEGG: csc:Csac_0834 peptidase M42 family protein.
  
     0.736
Athe_2570
PFAM: MORN variant repeat protein; KEGG: csc:Csac_0283 hypothetical protein.
  
     0.735
Athe_2566
PFAM: MORN variant repeat protein; KEGG: csc:Csac_0283 hypothetical protein.
  
     0.734
Athe_0438
PFAM: S-layer domain protein; KEGG: csc:Csac_0207 S-layer domain-containing protein.
  
     0.729
Athe_2120
PFAM: Ig domain protein group 2 domain protein; Thrombospondin type 3 repeat; von Willebrand factor type A; SMART: von Willebrand factor type A; Parallel beta-helix repeat; Ig domain protein group 2 domain protein; KEGG: csc:Csac_1310 Ig domain-containing protein.
  
     0.728
Athe_0339
KEGG: csc:Csac_1167 hypothetical protein.
  
     0.721
Athe_2303
PFAM: S-layer domain protein; KEGG: csc:Csac_2451 S-layer domain-containing protein.
  
     0.719
Athe_2572
KEGG: csc:Csac_0278 hypothetical protein.
  
     0.719
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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