STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_2223PFAM: KWG Leptospira repeat protein; KEGG: ctc:CTC01367 hypothetical protein. (591 aa)    
Predicted Functional Partners:
Athe_1386
PFAM: inner-membrane translocator; KEGG: csc:Csac_1941 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
    
   0.721
Athe_0720
PFAM: KWG Leptospira repeat protein; KEGG: cbl:CLK_1129 hypothetical protein.
  
     0.685
Athe_0723
PFAM: KWG Leptospira repeat protein; KEGG: cbh:CLC_1691 hypothetical protein.
  
     0.671
Athe_0722
PFAM: KWG Leptospira repeat protein; KEGG: ter:Tery_2057 hypothetical protein.
 
     0.667
Athe_2114
PFAM: KWG Leptospira repeat protein; KEGG: csc:Csac_0643 hypothetical protein.
  
     0.651
Athe_0721
PFAM: KWG Leptospira repeat protein; KEGG: csc:Csac_0643 hypothetical protein.
  
     0.645
Athe_0032
PFAM: KWG Leptospira repeat protein; KEGG: csc:Csac_0032 hypothetical protein.
  
     0.623
Athe_1862
PFAM: KWG Leptospira repeat protein; KEGG: csc:Csac_1083 hypothetical protein.
  
     0.619
Athe_2224
Hypothetical protein.
       0.507
Athe_0608
PFAM: S-layer domain protein; KEGG: cth:Cthe_1235 cellulose 1,4-beta-cellobiosidase.
  
     0.451
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.