STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_2227PFAM: class II aldolase/adducin family protein; KEGG: csc:Csac_0723 L-ribulose-5-phosphate 4-epimerase. (214 aa)    
Predicted Functional Partners:
araB
TIGRFAM: L-ribulokinase; PFAM: carbohydrate kinase FGGY; KEGG: csc:Csac_0721 ribulokinase.
 
 
 0.993
Athe_1047
KEGG: csc:Csac_2074 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
    
 0.950
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: csc:Csac_0798 xylulokinase.
  
 
 0.946
xylB-2
PFAM: carbohydrate kinase FGGY; KEGG: csc:Csac_0348 carbohydrate kinase, FGGY.
  
 
 0.946
Athe_2335
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: csc:Csac_0598 xylose isomerase domain-containing protein.
  
 
  0.904
uxaC
PFAM: Glucuronate isomerase; KEGG: csc:Csac_1949 glucuronate isomerase.
     
 0.858
Athe_2228
PFAM: regulatory protein GntR HTH; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein GntR HTH; KEGG: csc:Csac_0722 regulatory protein GntR, HTH.
 
  
 0.854
Athe_2028
PFAM: glycoside hydrolase family 4; KEGG: csc:Csac_2748 glycoside hydrolase family protein.
   
 
 0.807
Athe_2086
Beta-glucuronidase; PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 sugar binding; KEGG: dth:DICTH_1429 beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
   
 
  0.804
Athe_0802
Glycerol-1-phosphate dehydrogenase (NAD(P)(+)); PFAM: 3-dehydroquinate synthase; KEGG: csc:Csac_0948 glutamate-1-semialdehyde 2,1-aminomutase.
  
  
 0.577
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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