STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_2242PFAM: protein of unknown function DUF1680; KEGG: csc:Csac_0717 hypothetical protein. (652 aa)    
Predicted Functional Partners:
Athe_1103
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: csc:Csac_1561 alpha-N-arabinofuranosidase.
 
  
 0.794
Athe_1102
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: csc:Csac_1556 regulatory protein, ArsR.
 
     0.628
Athe_2072
Alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: csc:Csac_1340 alpha-L-fucosidase.
  
     0.604
Athe_2057
PFAM: glycoside hydrolase family 31; KEGG: csc:Csac_1354 alpha-xylosidase YicI; Belongs to the glycosyl hydrolase 31 family.
 
     0.515
Athe_0182
PFAM: glycoside hydrolase family 43; Carbohydrate binding family 6; Carbohydrate-binding CenC domain protein; SMART: cellulose binding type IV; KEGG: csc:Csac_2411 carbohydrate-binding family 6 protein.
 
   
 0.424
Athe_2370
PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; KEGG: csc:Csac_0362 glycoside hydrolase family protein.
 
     0.414
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.