STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_2248Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: afl:Aflv_1397 transcriptional regulator (GntR family). (128 aa)    
Predicted Functional Partners:
Athe_2250
KEGG: drm:Dred_3241 hypothetical protein.
 
  
 0.921
Athe_2249
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: drm:Dred_3242 ABC transporter related.
 
    0.908
Athe_0117
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csc:Csac_2498 ABC transporter related.
 
    0.564
Athe_2247
PFAM: protein of unknown function DUF421; KEGG: fps:FP0745 hypothetical protein.
       0.482
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.