STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_2389PFAM: Xylose isomerase domain protein TIM barrel; KEGG: csc:Csac_0350 xylose isomerase domain-containing protein. (303 aa)    
Predicted Functional Partners:
Athe_2390
KEGG: csc:Csac_0349 ketose-bisphosphate aldolase; TIGRFAM: ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II.
  
  
 0.759
Athe_2388
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: csc:Csac_0351 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
 
    0.743
xylB-2
PFAM: carbohydrate kinase FGGY; KEGG: csc:Csac_0348 carbohydrate kinase, FGGY.
 
  
 0.727
Athe_2106
PFAM: protein of unknown function DUF362; KEGG: csc:Csac_1323 hypothetical protein.
  
     0.579
Athe_2078
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: tma:TM0425 oxidoreductase, putative.
 
  
 0.545
Athe_2392
Transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; KEGG: csc:Csac_0347 DeoR family transcriptional regulator.
  
    0.544
Athe_2334
PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; Oxidoreductase domain; KEGG: csc:Csac_0599 oxidoreductase domain-containing protein.
 
  
 0.525
Athe_2385
PFAM: PfkB domain protein; KEGG: csc:Csac_2720 ribokinase-like domain-containing protein.
  
  
 0.525
Athe_2369
KEGG: csc:Csac_0363 hypothetical protein.
  
     0.494
Athe_0342
PFAM: major facilitator superfamily MFS_1; KEGG: csc:Csac_1170 major facilitator transporter.
 
    0.463
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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