STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_2437PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: ava:Ava_4407 D12 class N6 adenine-specific DNA methyltransferase. (279 aa)    
Predicted Functional Partners:
Athe_1588
KEGG: csc:Csac_0634 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase.
  
  
0.929
Athe_2017
PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: csc:Csac_1403 D12 class N6 adenine-specific DNA methyltransferase.
  
  
 
0.920
Athe_2438
Type II site-specific deoxyribonuclease; KEGG: bha:BH3509 restriction endonuclease (HaeIII).
     
 0.784
Athe_2439
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: cpo:COPRO5265_0041 tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
  
  
 0.501
Athe_1140
PFAM: protein of unknown function DUF87; KEGG: csc:Csac_1590 hypothetical protein.
 
     0.461
hpf
Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
      
 0.434
Athe_1658
KEGG: pdi:BDI_2712 adenine-specific DNA methylase; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.425
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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