STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_2467Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: csc:Csac_1408 XRE family transcriptional regulator. (122 aa)    
Predicted Functional Partners:
Athe_2466
PFAM: protein of unknown function DUF955; KEGG: csc:Csac_1409 hypothetical protein.
 
  
 0.936
Athe_2465
KEGG: csc:Csac_1410 hypothetical protein.
 
    0.928
Athe_2671
PFAM: protein of unknown function DUF955; KEGG: csc:Csac_2641 hypothetical protein.
 
  
 0.731
Athe_2670
KEGG: csc:Csac_1410 hypothetical protein.
 
    0.706
Athe_0914
PFAM: Zeta toxin family protein; KEGG: csc:Csac_0067 zeta toxin family protein.
  
 
 0.657
Athe_1027
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: csc:Csac_2097 XRE family transcriptional regulator.
 
  
 0.465
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.