STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_2576TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; KEGG: csc:Csac_0429 alpha-glucan phosphorylase. (540 aa)    
Predicted Functional Partners:
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
 
 0.986
glgC
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
  
 
 0.969
Athe_0556
TIGRFAM: glucose-1-phosphate adenylyltransferase, GlgD subunit; KEGG: csc:Csac_0782 glucose-1-phosphate adenylyltransferase, GlgD subunit.
  
 
 0.968
Athe_2579
PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein Ig domain protein region domain protein; SMART: alpha amylase catalytic sub domain; KEGG: csc:Csac_0426 alpha amylase, catalytic region.
  
 0.955
Athe_0448
KEGG: csc:Csac_0671 pullulanase, type I; TIGRFAM: pullulanase, type I; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.942
Athe_0609
KEGG: csc:Csac_0689 pullulanase, type I; TIGRFAM: pullulanase, type I; PFAM: pullanase-associated protein; glycoside hydrolase starch-binding; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.
  
 
 0.934
Athe_0228
PFAM: glycoside hydrolase 15-related; KEGG: csc:Csac_0130 glycoside hydrolase 15-related.
 
 
 0.932
Athe_2593
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: csc:Csac_0408 alpha amylase, catalytic region; Belongs to the glycosyl hydrolase 13 family.
  
 0.923
Athe_1151
TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: csc:Csac_1600 UTP-glucose-1-phosphate uridylyltransferase GalU.
     
 0.910
Athe_0460
PFAM: glycosyltransferase 36; putative carbohydrate binding; glycosyltransferase 36 associated; KEGG: csc:Csac_1091 glycosyltransferase 36.
     
 0.905
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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