STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_2591Hypothetical protein; KEGG: csc:Csac_0410 spermine synthase. (106 aa)    
Predicted Functional Partners:
speH
S-adenosylmethionine decarboxylase proenzyme; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 1 subfamily.
  
  
 0.766
Athe_2161
TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; KEGG: csc:Csac_1269 flagellar motor switch protein FliM.
    
   0.738
Athe_2592
KEGG: csc:Csac_0409 hypothetical protein.
       0.688
Athe_2590
KEGG: csc:Csac_0419 integral membrane sensor signal transduction histidine kinase.
  
    0.539
Athe_2195
PFAM: DNA polymerase beta domain protein region; KEGG: csc:Csac_1236 DNA polymerase beta subunit.
  
    0.514
Athe_1672
PFAM: DNA polymerase beta domain protein region; KEGG: csc:Csac_1667 DNA polymerase beta subunit.
  
     0.465
Athe_2345
PFAM: DNA polymerase beta domain protein region; KEGG: csc:Csac_0588 DNA polymerase beta subunit.
  
     0.461
Athe_2589
PFAM: histidine kinase A domain protein; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase A domain protein; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; KEGG: csc:Csac_0419 integral membrane sensor signal transduction histidine kinase.
  
    0.461
Athe_2593
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: csc:Csac_0408 alpha amylase, catalytic region; Belongs to the glycosyl hydrolase 13 family.
       0.451
Athe_1668
PFAM: DNA polymerase beta domain protein region; KEGG: csc:Csac_1672 DNA polymerase beta subunit.
  
     0.431
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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