STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_2597PFAM: protein of unknown function UPF0150; KEGG: csc:Csac_2103 hypothetical protein. (98 aa)    
Predicted Functional Partners:
Athe_1017
PFAM: YcfA family protein; KEGG: csc:Csac_2107 YcfA family protein.
 
 
 
 0.942
Athe_2005
PFAM: YcfA family protein; KEGG: amt:Amet_3356 YcfA family protein.
 
 
 
 0.804
Athe_2596
KEGG: csc:Csac_0189 IS605 family transposase OrfB.
       0.440
Athe_2598
PFAM: protein of unknown function DUF820; KEGG: csc:Csac_2746 hypothetical protein.
       0.432
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.